PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000175835
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 526aa    MW: 57138.5 Da    PI: 5.9771
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000175835genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-173380148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +l+++vk++G g+W+++ +  g+ R++k+c++rw ++l
    MDP0000175835 33 KGPWTAAEDAILIEYVKKHGEGNWNAVQKNSGLARCGKSCRLRWANHL 80
                     79******************************************9986 PP

2Myb_DNA-binding47.73.5e-1586129146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+ ++eE++l++++++++G++ W++ a+ ++ gRt++++k++w++
    MDP0000175835  86 KGSLSPEEEKLIIELHAKFGNK-WARMASQLP-GRTDNEIKNYWNT 129
                      57789*****************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-242783IPR009057Homeodomain-like
PROSITE profilePS5129417.7552880IPR017930Myb domain
SuperFamilySSF466894.49E-3030127IPR009057Homeodomain-like
SMARTSM007171.1E-143282IPR001005SANT/Myb domain
PfamPF002491.4E-153380IPR001005SANT/Myb domain
CDDcd001673.62E-123580No hitNo description
PROSITE profilePS5129424.81881135IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2484134IPR009057Homeodomain-like
SMARTSM007172.3E-1585133IPR001005SANT/Myb domain
PfamPF002492.2E-1486129IPR001005SANT/Myb domain
CDDcd001671.37E-1190129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MMLNSGVMDG VHEAAVGAQR GGSHHHHQQS LKKGPWTAAE DAILIEYVKK HGEGNWNAVQ  60
KNSGLARCGK SCRLRWANHL RPNLKKGSLS PEEEKLIIEL HAKFGNKWAR MASQLPGRTD  120
NEIKNYWNTR MKRRQRAGLP IYPRDLQQEA PAAAFQHHHQ LRHSSSSSAS SFSSLLSSSQ  180
PREPNNFSPS QLSLYDHITS TFSSTSDHQN PNNNYFLQNH HHISYSLYSN PMTQFHGNGG  240
FATPLSPFSP FGSSSTSALF NQSNIPNQAL IGQYNSHGGF GGYNNLSPSS MIMGPPTYDP  300
TPLVQGSNPE LPSNQTLLSI NGLGEGQMGG SGYTAGEDHY DIAPVPSQGN SGLLDDVLVE  360
AQNKSNKKAK SGDSCSSGWS SKEKGLMVEE EEEEGEESAE EEAEDTAQVE SKSSGENSAD  420
NQRDGSSSPS AIGMKQNEDP LEDMDDDLLX LLNFPSAPAV SESWYVQGCM SNRASMSGVV  480
TSDNVSLEIQ QNAPLMTPSV KTNTAATSEV KRSLGSCYWN NMPGIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30311345107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008342013.10.0PREDICTED: transcription factor MYB104-like
TrEMBLM5XAE20.0M5XAE2_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.13e-72myb domain protein 101